Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| KIRP | rs1700803 | chr16:20486365 | G/A | 0.000344 | 213 | 16.43 | 13.6 | 5.88 | KM Plot |
| KIRP | rs17062381 | chr6:102162049 | G/A | 1.78E-8 | 213 | 16.73 | 7.17 | 9 | KM Plot |
| KIRP | rs17062386 | chr6:102163070 | C/G | 1.78E-8 | 213 | 16.73 | 7.17 | 9 | KM Plot |
| KIRP | rs17078781 | chr5:176544228 | G/A | 5.79E-7 | 211 | 15.07 | 20.53 | 9.77 | KM Plot |
| KIRP | rs17081891 | chr18:67602921 | A/C | 0.000467 | 214 | 18.03 | 10.3 | 0 | KM Plot |
| KIRP | rs17096221 | chr14:59895734 | T/C | 9.33E-5 | 210 | 16.53 | 14.97 | 3.8 | KM Plot |
| KIRP | rs17112332 | chr1:95257897 | C/T | 0.00028 | 214 | 16.47 | 14.47 | 14.53 | KM Plot |
| KIRP | rs17118728 | chr15:24503671 | A/C | 0.000366 | 214 | 16.97 | 14.8 | 9.48 | KM Plot |
| KIRP | rs17125047 | chr14:52556800 | A/G | 3.7E-9 | 213 | 16.93 | 16.43 | 4.07 | KM Plot |
| KIRP | rs17125074 | chr14:52559041 | C/T | 1.7E-7 | 214 | 4.37 | 16.43 | 16.93 | KM Plot |
| KIRP | rs17128989 | chr14:74089565 | C/T | 9.05E-6 | 214 | 7.22 | 24.07 | 14.97 | KM Plot |
| KIRP | rs17137053 | chr16:4524155 | C/G | 3.38E-6 | 214 | 16.45 | 12.63 | 10.83 | KM Plot |
| KIRP | rs17137056 | chr16:4524685 | G/C | 3.38E-6 | 214 | 16.45 | 12.63 | 10.83 | KM Plot |
| KIRP | rs17146922 | chr4:70320578 | T/C | 1.49E-7 | 205 | 16.43 | 15.5 | 10.63 | KM Plot |
| KIRP | rs17156180 | chr11:1010876 | A/G | 2.75E-8 | 214 | 10.6 | 19.92 | 14.68 | KM Plot |